I just rebuild it again, it went away. not sure what I did wrong at
first try.

The last few lines during compilation are:
INFO: Can't locate Tcl/Tk libs and/or headers

Failed to find the necessary bits to build these modules:
_dbm               _sqlite3           _tkinter        
To find the necessary bits, look in setup.py in detect_modules() for the
module's name.

Looks like I need install python-sqlite etc.